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Species belonging to selected taxon:
Brassica napus
ABOUT THIS RECORD
ID:
MNEST040258
species:
Brassica napus
miRNA family:
MIR156
source:
miRBase, original name:
bna-MIR156a
(
MI0005770
)
Taxonomy by NCBI:
Brassica napus
Brassica
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGTGAGCACA
miRNA*
TGCTCACTGCTCTTTCTGTCAG
mismatches:
1
bulges:
2
View larger
pre-miRNA
TGACAGAAGAGAGTGAGCACA
CAAAAGTAATCTGCATATACTGCATTTGCTTCTCTTGCG
TGCTCACTGCTCTTTCTGTCAG
dot-bracket secondary structure
((((((((((((((((((((.
(((((((((..((((.....)))).))))))...))).)
)))))))).))).)))))))).
SIMILARITIES
miRBase
aly-MIR156a
:
1e-27
PMRD
bna-miR156a
:
2e-41
microPC
miR156
:
9e-41
UniProt
no hits
RFAM
mir-156: 5e-24
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
RTPCR
references
[
1
] Xie FL, Huang SQ, Guo K, Xiang AL, Zhu YY, Nie L, Yang ZM,
FEBS Lett. 581:1464-1474(2007).
,
"Computational identification of novel microRNAs and targets in Brassica napus"